## ----eval=FALSE---------------------------------------------------------------
# install.packages("netCoin")

## ----echo=TRUE, message=FALSE, warning=FALSE----------------------------------
library(netCoin)

## ----echo=TRUE----------------------------------------------------------------
data(dice)
head(dice)

## ----echo=TRUE----------------------------------------------------------------
head(dice[,-1])

## ----echo=TRUE----------------------------------------------------------------
C <- coin(dice[,-1]) # coincidence matrix
C

## ----eval=FALSE---------------------------------------------------------------
# N <- asNodes(C) # node data frame
# E <- edgeList(C) # edge data frame
# Net <- netCoin(N,E) # network object

## ----eval=FALSE---------------------------------------------------------------
# Net <- netCoin(N,E,dir="dice")

## ----echo=FALSE, out.width='98%'----------------------------------------------
knitr::include_graphics("Dice.png")

## -----------------------------------------------------------------------------
data("families")
data("links")

## ----message=FALSE, warning=FALSE, eval=FALSE---------------------------------
# G <- allNet(incidence=links[links$link=="Marriage",-17],
#      nodes=families, layout="md", percentages= FALSE,
#      criteria="f",minL=1, size="f.Marriages",shape="seat",
#      main="Marriage links beetween Italian families",
#      note="Data source: Padgett & Ansell (1983)")
# H <- allNet(incidence=links[links$link=="Business",-17],
#      nodes=families, layout="md", percentages= FALSE,
#      criteria="f",minL=1, size="f.Business",shape="seat",
#      main="Marriage links beetween Italian families",
#      note="Data source: Padgett & Ansell (1983)")
# 

## ----echo=TRUE, message=FALSE, warning=FALSE, eval=FALSE----------------------
# multigraphCreate(Marriage=G,Business=H,dir="italian")

## ----echo=FALSE, out.width='98%'----------------------------------------------
knitr::include_graphics("Padgett.png")

## ----echo=TRUE, message=FALSE, warning=FALSE, eval=FALSE----------------------
# data("Galapagos")
# data("finches")
# finches$species<-system.file("extdata", finches$species,
#         package="netCoin") # copy path to the species field
# Net<-allNet(Galapagos,nodes=finches, criteria="hyp", maxL=.05,
#         lwidth ="Haberman",lweight="Haberman",
#         size="frequency", image="species", layout="mds",
#         main="Species coincidences in Galapagos Islands",
#         note="Data source: Sanderson (2000)")
# plot(Net)

## ----echo=FALSE, out.width='98%'----------------------------------------------
knitr::include_graphics("Finches.png")